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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5168763_5173504_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5168763 - 5173504
Intron Length:
4742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTATCTTTATGT
Flanking Amino Acid:
KKQGEVLQEQIADTKTVDEE
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
33.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.6
0.89
0.7
87.9
29.4
Minor 5ss
26.1
-2.7
3.2
33.4
42.6
Minor BPS
54.2
0.21
1.9
72.07
45.2

Associated Gene:

Gene:
JHY
Ensembl Gene ID:
ENSAPLG00000010814
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011257
5165526 - 5182048
16523