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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5179023_5179145_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5179023 - 5179145

Intron Length:

123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTGTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTTAA

U12 Branch Point Sequence:

GTGTAGTTAACC

Flanking Amino Acid:

GPDYEAIKEKKEKLKQQKEY

Intron Amino Acid Position:

667

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

35.3

Major BPS

64.3

0.36

1.2

55.7

41.6

Major PPT

86.6

0.82

0.9

88.2

29.1

Minor 5ss

37.8

-1.4

2.7

46.1

Minor BPS

53.1

0.08

2.2

68.14

43.1

Associated Gene:

Gene:

JHY

Ensembl Gene ID:

ENSAPLG00000010814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011257

5165526 - 5182048

16523