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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5179272_5181356_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5179272 - 5181356
Intron Length:
2085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTCGTCTTAATC
Flanking Amino Acid:
QVISLVSRQKALEYAKKIPK
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
78.9
0.65
0.9
76.9
37.2
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
69.6
0.59
1.4
73.1
38.8

Associated Gene:

Gene:
JHY
Ensembl Gene ID:
ENSAPLG00000010814
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011257
5165526 - 5182048
16523