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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5190361_5190517_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5190361 - 5190517
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGA
5'SS Class:
major
3'SS Sequence:
TCTCCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
ATALSLSETQVKTWFQNRRM
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.2
42.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.5
0.62
0.7
69.3
31.3
Minor 5ss
27.5
-2.6
3.6
38.1
46.8
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
BSX
Ensembl Gene ID:
ENSAPLG00000018698
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018230
5190115 - 5191894
1780