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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5206133_5210858_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5206133 - 5210858
Intron Length:
4726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGATTAA
5'SS Class:
major
3'SS Sequence:
CCTATTTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CACTGCTTAATT
Flanking Amino Acid:
GASSGPTIEEIVAGTEEDAE
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
69.6
32.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
71.9
0.49
0.9
65
41.1
Minor 5ss
32
-2.1
3.1
39.4
46.5
Minor BPS
61.2
0.43
1.8
72.44
45

Associated Gene:

Gene:
HSPA8
Ensembl Gene ID:
ENSAPLG00000010667
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048256
5204595 - 5214788
10194