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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_520926_521033_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
520926 - 521033
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTTGCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAGTAC
U12 Branch Point Sequence:
CCAGGCTGACCC
Flanking Amino Acid:
IRSTPPPDRIAWSWKENVLE
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
67
38.3
Major BPS
43.4
-0.4
1.2
35.5
31.5
Major PPT
76.2
0.59
1
72.7
37.5
Minor 5ss
33.2
-1.9
2.8
42.7
38.4
Minor BPS
39.6
-0.8
2.1
43.12
44.4

Associated Gene:

Gene:
KIRREL3
Ensembl Gene ID:
ENSAPLG00000002775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045217
506331 - 755761
249431
ENSAPLT00000030204
506331 - 755834
249504
ENSAPLT00000017930
506331 - 755761
249431
ENSAPLT00000002848
506331 - 590542
84212
ENSAPLT00000045988
506331 - 613669
107339