Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5212209_5212469_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5212209 - 5212469

Intron Length:

261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCGAG

5'SS Class:

major

3'SS Sequence:

CTTCTCCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

ATCTGATGGATC

Flanking Amino Acid:

SDNQPGVLIQVYEGERAMTK

Intron Amino Acid Position:

423

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

63.2

43.4

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

73.9

0.54

0.7

66.3

Minor 5ss

34.3

-1.8

3.6

45.4

49.7

Minor BPS

42.5

-0.6

2.1

53.45

38.5

Associated Gene:

Gene:

HSPA8

Ensembl Gene ID:

ENSAPLG00000010667

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048256

5204595 - 5214788

10194

ENSAPLT00000011131

5210691 - 5214788

4098