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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5224507_5226141_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5224507 - 5226141
Intron Length:
1635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTCTGGACAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTTTCTGGACA
Flanking Amino Acid:
ESCVVQVTVQQAQNIGMIAG
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.3
77.8
38.7
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
65.2
0.34
1
59.1
40.7
Minor 5ss
37.2
-1.5
2.9
46.9
41.8
Minor BPS
67.6
0.55
1.4
77.09
32.9

Associated Gene:

Gene:
CLMP
Ensembl Gene ID:
ENSAPLG00000010660
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011095
5222613 - 5265402
42790