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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5269964_5295549_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5269964 - 5295549
Intron Length:
25586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAGC
5'SS Class:
major
3'SS Sequence:
AAATCTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATTCCTTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
62.1
42.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
70.7
0.47
0.9
67.3
39.1
Minor 5ss
45.2
-0.5
2.7
60.7
44
Minor BPS
73.3
0.81
1.3
85.47
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016820
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022429
5269921 - 5341604
71684