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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_528832_545153_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
528832 - 545153
Intron Length:
16322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAA
U12 Branch Point Sequence:
TCTTGTCTGACA
Flanking Amino Acid:
AKANPAVTQYRWAKKGQVIK
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
48.8
-0
1
54.9
31.1
Major PPT
76.2
0.59
1
72.2
38
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
48.9
-0
2.1
66.57
40.3

Associated Gene:

Gene:
KIRREL3
Ensembl Gene ID:
ENSAPLG00000002775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030204
506331 - 755834
249504
ENSAPLT00000017930
506331 - 755761
249431
ENSAPLT00000002848
506331 - 590542
84212
ENSAPLT00000045988
506331 - 613669
107339
ENSAPLT00000045217
506331 - 755761
249431