About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5295970_5328844_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5295970 - 5328844
Intron Length:
32875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
GACCTCCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTCTCTGACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
68.5
0.42
0.9
60.7
34.9
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
53.8
0.2
1.8
73.74
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016820
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032849
5295550 - 5359100
63551
ENSAPLT00000022429
5269921 - 5341604
71684
ENSAPLT00000020617
5281825 - 5341604
59780