Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_53384_75547_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

53384 - 75547

Intron Length:

22164

Sequence Information:

Terminal Dinucleotides:

GC-CG

5'SS Sequence:

CCG|GCAGCGCCC

5'SS Class:

weak_major

3'SS Sequence:

TTCCGGGTCAGCG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

GGCGGCTCACGC

Flanking Amino Acid:

AGRRAKRAAPAPAPAPAPIA

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.6

0.2

1.4

55.8

40.2

Major BPS

52.1

0.05

1.3

41.8

Major PPT

30.4

-1.1

3.3

44.2

41.3

Minor 5ss

26.3

-2.7

4.3

42.5

44.7

Minor BPS

33.6

-1.2

2.1

35.25

41.1

Associated Gene:

Gene:

PUS3

Ensembl Gene ID:

ENSAPLG00000013285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033372

52985 - 81316

28332