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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5361238_5386477_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5361238 - 5386477
Intron Length:
25240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
AAGGTTTACACT
Flanking Amino Acid:
AVLMKGFKLACTASNSNRST
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
62.5
42.3
Major BPS
72.8
0.57
1
81
30.3
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
30
-2.3
3.3
35.2
43.3
Minor BPS
41.4
-0.6
2
53.87
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026453
5360421 - 5418917
58497
ENSAPLT00000025086
5360421 - 5418956
58536
ENSAPLT00000045884
5360421 - 5418917
58497
ENSAPLT00000020109
5360421 - 5423954
63534
ENSAPLT00000040004
5360421 - 5418917
58497
ENSAPLT00000039125
5360421 - 5422752
62332