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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5386689_5393971_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5386689 - 5393971
Intron Length:
7283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
SGRSGAKNSKKSQSWYNVLS
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010791
5378962 - 5417398
38437
ENSAPLT00000034729
5352688 - 5419757
67070
ENSAPLT00000026528
5371313 - 5419757
48445
ENSAPLT00000026453
5360421 - 5418917
58497
ENSAPLT00000040004
5360421 - 5418917
58497
ENSAPLT00000025086
5360421 - 5418956
58536
ENSAPLT00000039125
5360421 - 5422752
62332