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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5386689_5403024_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5386689 - 5403024
Intron Length:
16336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTCTCTTTAACA
Flanking Amino Acid:
SGRSGAKNSKVLSPTYKQRN
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
82.7
0.74
0.9
77.1
36
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
78.2
0.88
1.2
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045884
5360421 - 5418917
58497