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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5388239_5393971_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5388239 - 5393971
Intron Length:
5733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
NSKSHKRLSKKSQSWYNVLS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.5
40.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
45.5
-0.5
3.1
65.9
39.3
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020109
5360421 - 5423954
63534