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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5401360_5403024_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5401360 - 5403024
Intron Length:
1665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CTGTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTCTCTTTAACA
Flanking Amino Acid:
VSSGSDEILAVLSPTYKQRN
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
74.7
35.4
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
82.7
0.74
0.9
77.1
36
Minor 5ss
36.1
-1.6
3.5
59
45.5
Minor BPS
78.2
0.88
1.2
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039254
5401222 - 5419757
18536