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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5403971_5404125_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5403971 - 5404125
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
ATGGCTCTGACT
Flanking Amino Acid:
YSNIFRWETLLTVRLKDICS
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
69.6
41.1
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
66
0.36
0.9
59
36.9
Minor 5ss
35.5
-1.7
3.4
47.8
42.4
Minor BPS
50.2
0.09
1.8
69.62
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026453
5360421 - 5418917
58497
ENSAPLT00000039254
5401222 - 5419757
18536
ENSAPLT00000025086
5360421 - 5418956
58536
ENSAPLT00000039125
5360421 - 5422752
62332
ENSAPLT00000020109
5360421 - 5423954
63534
ENSAPLT00000034729
5352688 - 5419757
67070
ENSAPLT00000010791
5378962 - 5417398
38437
ENSAPLT00000026528
5371313 - 5419757
48445
ENSAPLT00000045884
5360421 - 5418917
58497