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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5403971_5404693_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5403971 - 5404693
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTCTCTCCATC
Flanking Amino Acid:
YSNIFRWETLHFFTSFGARD
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
69.6
41.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.3
0.68
0.8
78
29.6
Minor 5ss
35.5
-1.7
3.4
47.8
42.4
Minor BPS
49.3
-0
1.9
67.51
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040004
5360421 - 5418917
58497