Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5404222_5404693_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5404222 - 5404693

Intron Length:

472

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACATCCT

5'SS Class:

major

3'SS Sequence:

TCTTCCCATTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TTTCTCTCCATC

Flanking Amino Acid:

AIQVCTDTEKHFFTSFGARD

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.1

68.9

41.9

Major BPS

82.1

0.8

71.6

36.4

Major PPT

80.3

0.68

0.8

29.6

Minor 5ss

35.1

-1.7

3.2

51.3

45.1

Minor BPS

49.3

-0

1.9

67.51

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026453

5360421 - 5418917

58497

ENSAPLT00000039254

5401222 - 5419757

18536

ENSAPLT00000025086

5360421 - 5418956

58536

ENSAPLT00000039125

5360421 - 5422752

62332

ENSAPLT00000020109

5360421 - 5423954

63534

ENSAPLT00000034729

5352688 - 5419757

67070

ENSAPLT00000010791

5378962 - 5417398

38437

ENSAPLT00000026528

5371313 - 5419757

48445

ENSAPLT00000045884

5360421 - 5418917

58497