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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5407154_5407641_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5407154 - 5407641
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGGCGTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TAAACATAAAAA
Flanking Amino Acid:
VPPDDDFNTMGYCEEIPVEE
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
66.4
0.37
1
61.6
44.5
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
45.8
-0.3
2
57.35
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026453
5360421 - 5418917
58497
ENSAPLT00000039254
5401222 - 5419757
18536
ENSAPLT00000025086
5360421 - 5418956
58536
ENSAPLT00000039125
5360421 - 5422752
62332
ENSAPLT00000020109
5360421 - 5423954
63534
ENSAPLT00000034729
5352688 - 5419757
67070
ENSAPLT00000045884
5360421 - 5418917
58497
ENSAPLT00000010791
5378962 - 5417398
38437
ENSAPLT00000026528
5371313 - 5419757
48445
ENSAPLT00000040004
5360421 - 5418917
58497