About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5409305_5410126_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5409305 - 5410126
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GTTACTTTGATG
Flanking Amino Acid:
RDFMEQRRFSDIIFHPWKKE
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.8
41
Major BPS
84
0.85
0.9
75
39.9
Major PPT
86.5
0.82
0.6
84.9
22.6
Minor 5ss
44.3
-0.6
2.9
56
43.7
Minor BPS
61.6
0.22
1.4
63.69
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026453
5360421 - 5418917
58497
ENSAPLT00000039254
5401222 - 5419757
18536
ENSAPLT00000025086
5360421 - 5418956
58536
ENSAPLT00000039125
5360421 - 5422752
62332
ENSAPLT00000020109
5360421 - 5423954
63534
ENSAPLT00000034729
5352688 - 5419757
67070
ENSAPLT00000045884
5360421 - 5418917
58497
ENSAPLT00000010791
5378962 - 5417398
38437
ENSAPLT00000026528
5371313 - 5419757
48445
ENSAPLT00000040004
5360421 - 5418917
58497