Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5411538_5411809_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5411538 - 5411809

Intron Length:

272

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGAGTG

5'SS Class:

strong_major

3'SS Sequence:

GCTGCCTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TCTCTATTAAAT

Flanking Amino Acid:

SGLEDYFRHLESELTKTEST

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

69.9

41.1

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

73.2

0.52

0.9

65.6

Minor 5ss

33.6

-1.9

3.5

39.1

46.1

Minor BPS

57.7

0.32

1.7

75.71

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010791

5378962 - 5417398

38437

ENSAPLT00000026528

5371313 - 5419757

48445

ENSAPLT00000040004

5360421 - 5418917

58497

ENSAPLT00000026453

5360421 - 5418917

58497

ENSAPLT00000039254

5401222 - 5419757

18536

ENSAPLT00000025086

5360421 - 5418956

58536

ENSAPLT00000039125

5360421 - 5422752

62332

ENSAPLT00000020109

5360421 - 5423954

63534

ENSAPLT00000034729

5352688 - 5419757

67070

ENSAPLT00000045884

5360421 - 5418917

58497