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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5412014_5412240_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5412014 - 5412240
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATAGCCTGAACA
Flanking Amino Acid:
EVAHRIKHVAGSTQTRHIPE
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
32.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.5
0.49
0.9
71.2
34.5
Minor 5ss
24.1
-3
3.3
31
43.4
Minor BPS
64.7
0.46
1.6
71.96
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025086
5360421 - 5418956
58536
ENSAPLT00000039125
5360421 - 5422752
62332
ENSAPLT00000020109
5360421 - 5423954
63534
ENSAPLT00000034729
5352688 - 5419757
67070
ENSAPLT00000045884
5360421 - 5418917
58497
ENSAPLT00000010791
5378962 - 5417398
38437
ENSAPLT00000026528
5371313 - 5419757
48445
ENSAPLT00000040004
5360421 - 5418917
58497
ENSAPLT00000026453
5360421 - 5418917
58497
ENSAPLT00000039254
5401222 - 5419757
18536