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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5412332_5414118_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5412332 - 5414118
Intron Length:
1787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
VSKLLLVISFVLVLLVILNM
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.6
0.89
0.7
84.8
28.7
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025086
5360421 - 5418956
58536
ENSAPLT00000039125
5360421 - 5422752
62332
ENSAPLT00000020109
5360421 - 5423954
63534
ENSAPLT00000034729
5352688 - 5419757
67070
ENSAPLT00000045884
5360421 - 5418917
58497
ENSAPLT00000010791
5378962 - 5417398
38437
ENSAPLT00000026528
5371313 - 5419757
48445
ENSAPLT00000040004
5360421 - 5418917
58497
ENSAPLT00000026453
5360421 - 5418917
58497
ENSAPLT00000039254
5401222 - 5419757
18536