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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5414227_5417142_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5414227 - 5417142
Intron Length:
2916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TTCTGCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTCCCCAGATT
Flanking Amino Acid:
TAWQGLRLQERLPQSQTEWA
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
73.2
0.52
1
68.6
37.4
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
50.2
0.09
2
77.5
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026453
5360421 - 5418917
58497