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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5416083_5417142_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5416083 - 5417142
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTCCCCAGATT
Flanking Amino Acid:
PQAGDRSVPGRLPQSQTEWA
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
73.2
0.52
1
68.6
37.4
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
50.2
0.09
2
77.5
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026528
5371313 - 5419757
48445
ENSAPLT00000040004
5360421 - 5418917
58497
ENSAPLT00000025086
5360421 - 5418956
58536
ENSAPLT00000039254
5401222 - 5419757
18536
ENSAPLT00000020109
5360421 - 5423954
63534
ENSAPLT00000039125
5360421 - 5422752
62332
ENSAPLT00000010791
5378962 - 5417398
38437
ENSAPLT00000034729
5352688 - 5419757
67070
ENSAPLT00000045884
5360421 - 5418917
58497