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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5417261_5423773_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5417261 - 5423773
Intron Length:
6513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTGTTTTTGTTT
Flanking Amino Acid:
IKSSVMLLDQ*
Intron Amino Acid Position:
911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
70.4
35.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
26.8
-2.7
2.8
31.2
42.4
Minor BPS
44
-0.3
3.4
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010327
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020109
5360421 - 5423954
63534