About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5427169_5427646_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
5427169 - 5427646
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
CTTTCACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AATTCTTTCACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.3
39.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
83.8
0.76
0.8
77.7
29.8
Minor 5ss
32.5
-2
3.5
39.8
46.2
Minor BPS
68.7
0.67
1.7
83.43
37.5

Associated Gene:

Gene:
SCN3B
Ensembl Gene ID:
ENSAPLG00000010155
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045358
5425940 - 5433848
7909