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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5429768_5431355_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5429768 - 5431355

Intron Length:

1588

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTATGTATG

5'SS Class:

weak_major

3'SS Sequence:

CATTTCCTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

AATCCCTTCACA

Flanking Amino Acid:

YRPEGGKDEPIYKYRNTNQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.4

0.32

1.3

65.7

45.5

Major BPS

77.7

0.69

83.3

27.7

Major PPT

78.9

0.65

0.8

72.6

31.8

Minor 5ss

47.3

-0.3

2.5

64.1

40.5

Minor BPS

64.1

0.44

1.8

72.89

38.4

Associated Gene:

Gene:

SCN3B

Ensembl Gene ID:

ENSAPLG00000010155

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045358

5425940 - 5433848

7909

ENSAPLT00000010582

5427647 - 5441593

13947