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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5433849_5441434_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5433849 - 5441434
Intron Length:
7586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GCACGTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
82.8
0.74
0.7
80.8
24.3
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
50.7
0.02
1.8
58.17
41.4

Associated Gene:

Gene:
SCN3B
Ensembl Gene ID:
ENSAPLG00000010155
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010582
5427647 - 5441593
13947