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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5466367_5466817_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5466367 - 5466817

Intron Length:

451

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

AGACTCTTATTT

Flanking Amino Acid:

IAFYSTTCVEGTATGIVINT

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

79.6

35.4

Major BPS

79.1

0.72

69.3

38.4

Major PPT

90.5

0.91

0.7

89.1

27.5

Minor 5ss

38.1

-1.3

2.7

51.1

45.4

Minor BPS

0.14

1.6

65.31

39.1

Associated Gene:

Gene:

ATP12A

Ensembl Gene ID:

ENSAPLG00000009590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034861

5460531 - 5479344

18814

ENSAPLT00000010090

5460531 - 5479506

18976