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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5469352_5469828_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5469352 - 5469828

Intron Length:

477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

ATTTCATCAACT

Flanking Amino Acid:

ELGGMGERVLGFCHLYLPEN

Intron Amino Acid Position:

563

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

0.9

71.1

34.7

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

87.9

0.85

0.7

85.4

29.3

Minor 5ss

27.1

-2.6

2.9

24.2

36.8

Minor BPS

68.8

0.67

1.8

88.58

35.5

Associated Gene:

Gene:

ATP12A

Ensembl Gene ID:

ENSAPLG00000009590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034861

5460531 - 5479344

18814

ENSAPLT00000010090

5460531 - 5479506

18976