Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5471204_5471929_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5471204 - 5471929

Intron Length:

726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

ATGGCTATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

GGTTTGAAAATT

Flanking Amino Acid:

LNIPVEQVNRREATAAVVNG

Intron Amino Acid Position:

667

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

69.1

35.7

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

70.4

0.46

62.3

42.7

Minor 5ss

31.2

-2.1

3.3

40.6

45.1

Minor BPS

41.4

-0.5

2.4

61.64

42.6

Associated Gene:

Gene:

ATP12A

Ensembl Gene ID:

ENSAPLG00000009590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034861

5460531 - 5479344

18814

ENSAPLT00000010090

5460531 - 5479506

18976