Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5472081_5474008_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5472081 - 5474008

Intron Length:

1928

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGGT

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAAAAA

U12 Branch Point Sequence:

ACATCCGCATCC

Flanking Amino Acid:

LIIVEGCQRQGAVVAVTGDG

Intron Amino Acid Position:

718

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.9

35.3

Major BPS

47.9

-0.1

0.9

51.7

28.4

Major PPT

0.63

69.2

46.1

Minor 5ss

32.2

-2

3.5

47.6

47.9

Minor BPS

42.8

-0.5

2.3

53.78

43.8

Associated Gene:

Gene:

ATP12A

Ensembl Gene ID:

ENSAPLG00000009590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034861

5460531 - 5479344

18814

ENSAPLT00000010090

5460531 - 5479506

18976