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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5476983_5477929_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5476983 - 5477929

Intron Length:

947

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GGTTTTCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTAAC

U12 Branch Point Sequence:

ACACGTGTAACC

Flanking Amino Acid:

RNSIFQQGLFRNKVIWVGIF

Intron Amino Acid Position:

960

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.2

1.16

0.6

9.5

Major BPS

56.8

0.17

1.4

61.4

43.2

Major PPT

79.2

0.66

0.8

73.9

36.8

Minor 5ss

46.1

-0.4

2.8

66.9

44.4

Minor BPS

42.4

-0.5

2.2

50.44

40.5

Associated Gene:

Gene:

ATP12A

Ensembl Gene ID:

ENSAPLG00000009590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034861

5460531 - 5479344

18814

ENSAPLT00000010090

5460531 - 5479506

18976