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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_549904_553324_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
549904 - 553324
Intron Length:
3421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATCTCCCTATCT
Flanking Amino Acid:
EVINGATYSKTLLRDGKRES
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
78.4
0.64
0.7
72.1
26.1
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
58.6
0.35
2
79.18
42.7

Associated Gene:

Gene:
KIRREL3
Ensembl Gene ID:
ENSAPLG00000002775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030204
506331 - 755834
249504
ENSAPLT00000017930
506331 - 755761
249431
ENSAPLT00000002848
506331 - 590542
84212
ENSAPLT00000045988
506331 - 613669
107339
ENSAPLT00000045217
506331 - 755761
249431