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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5502179_5502776_R

Intron Information:

Intron Rank:
137723
Intron Class:
major
Intron Phase:
Intron Coordinates:
5502179 - 5502776
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGTC
5'SS Class:
major
3'SS Sequence:
TTTTCTGTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTCTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
66.8
37.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.9
77.2
35.8
Minor 5ss
33.3
-1.9
3.7
50
46.5
Minor BPS
72.2
0.69
2
86.93
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021608
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035387
5500296 - 5503461
3166