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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5516351_5516465_R

Intron Information:

Intron Rank:
133258
Intron Class:
major
Intron Phase:
Intron Coordinates:
5516351 - 5516465
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGAGAAT
U12 Branch Point Sequence:
TTTTGCTTTCCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
45.6
-0.2
1.4
49.8
42.2
Major PPT
89
0.88
0.7
81
36.6
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
42.7
-0.5
3.8
75.18
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018939
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038464
5515932 - 5518007
2076