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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5517117_5517293_R

Intron Information:

Intron Rank:
133250
Intron Class:
major
Intron Phase:
Intron Coordinates:
5517117 - 5517293
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTTTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.5
0.55
0.8
69.9
29.6
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
66.5
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018939
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021952
5515932 - 5518007
2076