Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5517474_5517640_R

Intron Information:

Intron Rank:

133251

Intron Class:

major

Intron Phase:

Intron Coordinates:

5517474 - 5517640

Intron Length:

167

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGACTT

5'SS Class:

major

3'SS Sequence:

TTCTGTTTGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAA

U12 Branch Point Sequence:

GGCTCCTTAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

71.5

40.2

Major BPS

69.7

0.49

59.9

38.5

Major PPT

75.6

0.58

76.8

37.4

Minor 5ss

31.1

-2.2

3.5

46.9

48.4

Minor BPS

65.1

0.33

1.6

62.54

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018939

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038464

5515932 - 5518007

2076

ENSAPLT00000021952

5515932 - 5518007

2076