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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5518893_5519135_R

Intron Information:

Intron Rank:
133261
Intron Class:
major
Intron Phase:
Intron Coordinates:
5518893 - 5519135
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTGA
5'SS Class:
major
3'SS Sequence:
TTCTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTCCAATTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
59.4
42.3
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
87.3
0.84
0.7
84.9
22.7
Minor 5ss
41.5
-0.9
3.2
56.3
47.8
Minor BPS
49.8
0.07
2.2
80.7
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018939
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047810
5518533 - 5520939
2407