Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5519305_5519518_R

Intron Information:

Intron Rank:

133252

Intron Class:

major

Intron Phase:

Intron Coordinates:

5519305 - 5519518

Intron Length:

214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGCTG

5'SS Class:

major

3'SS Sequence:

CTGTTATTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTTAT

U12 Branch Point Sequence:

TTCTCTGTTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.1

57.3

Major BPS

0.47

1.2

61.1

45.5

Major PPT

81.8

0.72

0.9

73.4

Minor 5ss

33.4

-1.9

3.6

47.4

Minor BPS

49.4

0.03

2.3

75.01

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018939

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024739

5518533 - 5520110

1578