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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_553483_584499_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
553483 - 584499
Intron Length:
31017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CATTGCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
GCCTCCTTCATG
Flanking Amino Acid:
RSRPARLTVLVPPDDPIIMG
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
71.9
39.6
Major BPS
75
0.62
1.1
77.2
36
Major PPT
77.2
0.61
0.9
69.7
36.3
Minor 5ss
35
-1.7
2.9
43.6
43.3
Minor BPS
53.7
-0
1.9
55.32
46.4

Associated Gene:

Gene:
KIRREL3
Ensembl Gene ID:
ENSAPLG00000002775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030204
506331 - 755834
249504
ENSAPLT00000017930
506331 - 755761
249431
ENSAPLT00000002848
506331 - 590542
84212
ENSAPLT00000045988
506331 - 613669
107339
ENSAPLT00000045217
506331 - 755761
249431