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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5561975_5563249_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5561975 - 5563249
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TATCTCCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
RMGWENRIGQGALAVEVRAK
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.3
0.66
0.8
73.5
31.2
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
HMBS
Ensembl Gene ID:
ENSAPLG00000008426
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008800
5560553 - 5567135
6583