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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5563364_5563592_R

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
5563364 - 5563592
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACCGCTTTTACAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CTATACTTAACC
Flanking Amino Acid:
KFPHLEFRDIRGNLNTRLKK
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.5
-0
1.4
55
44.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
75.2
0.57
0.9
67.8
37.1
Minor 5ss
95.1
1.52
0.8
90.6
20
Minor BPS
72.1
0.67
1.5
76.46
39.3

Associated Gene:

Gene:
HMBS
Ensembl Gene ID:
ENSAPLG00000008426
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008800
5560553 - 5567135
6583