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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5563669_5564755_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5563669 - 5564755
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTTCTCAACA
Flanking Amino Acid:
GKTLSLLPEKSVIGTSSLRR
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.9
0.65
0.9
74.7
34.3
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
73.7
0.74
1.4
81.94
32.6

Associated Gene:

Gene:
HMBS
Ensembl Gene ID:
ENSAPLG00000008426
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008800
5560553 - 5567135
6583