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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5564834_5565145_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5564834 - 5565145
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTGTATTATTT
Flanking Amino Acid:
PPGFTIGAVCKRESPLDAVV
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.5
0.82
0.8
81.1
35.8
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
47.9
-0
1.9
67.89
43.7

Associated Gene:

Gene:
HMBS
Ensembl Gene ID:
ENSAPLG00000008426
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008800
5560553 - 5567135
6583