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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5565224_5566120_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5565224 - 5566120
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
CTGTAATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TGTCCTGTAATT
Flanking Amino Acid:
KELENALERNEVDLVVHSLK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
61
39.2
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
73.3
0.53
0.9
70.3
40
Minor 5ss
33
-1.9
3.3
39.7
39.8
Minor BPS
57.4
0.31
2
77.88
38.9

Associated Gene:

Gene:
HMBS
Ensembl Gene ID:
ENSAPLG00000008426
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008800
5560553 - 5567135
6583