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Intron Name: Anas_platyrhynchos_platyrhynchos_25_5573958_5574590_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5573958 - 5574590

Intron Length:

633

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGCAGG

5'SS Class:

major

3'SS Sequence:

CTTCCCCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTTAT

U12 Branch Point Sequence:

TGTGACGTGATT

Flanking Amino Acid:

NHDGAIQQYIRTIGKLEPSY

Intron Amino Acid Position:

402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

47.6

Major BPS

66.2

0.4

1.3

57.4

49.1

Major PPT

82.3

0.73

0.7

73.2

31.7

Minor 5ss

39.3

-1.2

2.9

49.6

46.4

Minor BPS

-0.2

2.2

68.42

42.9

Associated Gene:

Gene:

VPS11

Ensembl Gene ID:

ENSAPLG00000007732

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008060

5568969 - 5577548

8580